8vmu_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 320S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.52, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmu_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmu_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.781 IC/col=1.089 n_of_columns=20

specificity:

A |   0   0  42   0   0   0   0   3   5   0  96  75   0  71   0  96   0  17   0  96
C |   0   0   3  96   0  96  69  92  13   0   0   3   0   1   0   0   0  36  96   0
G |   0  96  48   0   0   0   1   1   5   0   0   3  95  24  96   0  96   5   0   0
T |  96   0   3   0  96   0  26   0  73  96   0  15   1   0   0   0   0  38   0   0

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updated Thu Sep 12 11:00:47 2024