8vmw_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH6.0 (K+ MES) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.60, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmw_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmw_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=19.014 IC/col=1.001 n_of_columns=19

specificity:

A |   3   0  24   0   0   0   8   3  15   0  96  67   6  44   0  96   0   1   0
C |   5   0  24  96   0  96  24  92   7   0   0  21   5   5   0   0   0  83  96
G |   1  96  24   0   0   0   1   1   5   0   0   3  80  46  96   0  96   5   0
T |  87   0  24   0  96   0  63   0  69  96   0   5   5   1   0   0   0   7   0

scan!

home
updated Fri Aug 1 20:45:30 2025