8vmw_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH6.0 (K+ MES) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.60, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmw_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmw_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=19.078 IC/col=1.004 n_of_columns=19

specificity:

A |   5   0  24   0   0   0   4   5   9   0  96  69   1  25   0  96   0   1   0
C |   3   0  24  96   0  96  32  90  13   0   0  11   6   3   0   0   0  80  96
G |   3  96  24   0   0   0   3   1   3   0   0  13  84  67  96   0  96   6   0
T |  85   0  24   0  96   0  57   0  71  96   0   3   5   1   0   0   0   9   0

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updated Mon Dec 16 13:43:09 2024