8vmx_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MG2+ FOR 10S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.45, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmx_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmx_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=19.028 IC/col=1.001 n_of_columns=19

specificity:

A |   5   0  24   0   0   0   1   5   3   0  96  72   1  26   0  96   0   3   0
C |   1   0  24  96   0  96  34  88  10   0   0   5   5   8   0   0   0  71  96
G |   4  96  24   0   0   0   1   3   3   0   0  10  83  59  96   0  96   5   0
T |  86   0  24   0  96   0  60   0  80  96   0   9   7   3   0   0   0  17   0

scan!

home
updated Thu Sep 12 11:01:13 2024