8vmy_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MG2+ FOR 20S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.53, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmy_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmy_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=18.807 IC/col=0.990 n_of_columns=19

specificity:

A |   0  13   0   0   0   3   3   8   0  96  71   0  55   0  96   0  24   0  83
C |   0   5  96   0  96  33  84  13   2   0  15   1   4   0   0   0  24  96   5
G |  96  74   0   0   0   1   3   3   0   0   5  92  34  96   0  96  24   0   3
T |   0   4   0  96   0  59   6  72  94   0   5   3   3   0   0   0  24   0   5

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updated Thu Sep 12 11:01:24 2024