8vmz_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MG2+ FOR 40S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.57, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmz_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmz_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=18.955 IC/col=0.998 n_of_columns=19

specificity:

A |   7   0  24   0   0   0   5   1   7   0  96  71   4  62   0  96   0   3   0
C |  10   0  24  96   0  96  33  90   5   0   0   9   3   3   0   0   0  76  96
G |   3  96  24   0   0   0   1   5   5   0   0   7  88  28  96   0  96   6   0
T |  76   0  24   0  96   0  57   0  79  96   0   9   1   3   0   0   0  11   0

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updated Thu Jan 8 13:13:20 2026