8vmz_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MG2+ FOR 40S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.57, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmz_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmz_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=18.938 IC/col=0.997 n_of_columns=19

specificity:

A |   0  19   0   0   0   1   3  13   0  96  72   0  61   0  96   0  24   0  83
C |   0   5  96   0  96  30  84   9   0   0   7   0   4   0   0   0  24  96   7
G |  96  69   0   0   0   4   8   7   0   0   7  96  28  96   0  96  24   0   3
T |   0   3   0  96   0  61   1  67  96   0  10   0   3   0   0   0  24   0   3

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updated Thu Sep 12 11:01:35 2024