8vn5_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH8.0 (TRIS) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.65, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn5_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vn5_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=19.933 IC/col=0.997 n_of_columns=20

specificity:

A |   0   0  17   0   0   0   4   3   8   0  96  70   3  66   0  96   0  24   0  82
C |   0   0   3  96   0  96  64  84   7   1   0   7   6   6   0   0   0  24  96   3
G |   0  96  70   0   0   0   3   3   5   1   0  14  86  23  96   0  96  24   0   3
T |  96   0   6   0  96   0  25   6  76  94   0   5   1   1   0   0   0  24   0   8

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updated Thu Sep 12 11:02:26 2024