8vn5_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH8.0 (TRIS) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.65, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn5_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vn5_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=19.656 IC/col=0.983 n_of_columns=20

specificity:

A |   0   0  17   0   0   0   3   1  11   0  96  65   3  51   0  96   0  24   0  80
C |   0   0   4  96   0  96  49  88   7   5   0   9   3   1   0   0   0  24  96   3
G |   0  96  74   0   0   0   5   6  13   1   0   9  90  41  96   0  96  24   0   5
T |  96   0   1   0  96   0  39   1  65  90   0  13   0   3   0   0   0  24   0   8

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updated Fri Aug 1 20:47:36 2025