8vn5_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH8.0 (TRIS) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.65, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn5_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vn5_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=19.920 IC/col=0.996 n_of_columns=20

specificity:

A |   3   0  24   0   0   0   5   3  11   0  94  73   1  24   0  96   0   3   0  96
C |   7   0  24  96   0  96  67  80   3   1   1   5   1   6   0   0   0  67  96   0
G |   3  96  24   0   0   0   3   7   8   1   1  13  88  65  96   0  96   1   0   0
T |  83   0  24   0  96   0  21   6  74  94   0   5   6   1   0   0   0  25   0   0

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updated Mon Dec 16 13:45:16 2024