8vn5_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH8.0 (TRIS) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.65, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn5_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vn5_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=20.218 IC/col=1.011 n_of_columns=20

specificity:

A |   0   0  15   0   0   0   5   1  15   0  96  57   0  61   0  96   0  24   0  86
C |   0   0   3  96   0  96  44  90   3   0   0  15   1   1   0   0   0  24  96   8
G |   0  96  69   0   0   0   3   5   6   0   0  13  90  34  96   0  96  24   0   1
T |  96   0   9   0  96   0  44   0  72  96   0  11   5   0   0   0   0  24   0   1

scan!

home
updated Thu Jan 8 13:14:52 2026