8vn8_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH8.0 (TRIS) WITH 500 UM MG2+ FOR 40S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.60, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn8_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vn8_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=23.276 IC/col=1.164 n_of_columns=20

specificity:

A |   0   0  66   0   0   0   0   0   0   0  96  96   0  96   0  96   0  15   6  76
C |   0   0  12  96   0  96   0  96   0   0   0   0   0   0   0   0   0  12  76   6
G |   0  96   6   0   0   0   0   0   0   0   0   0  96   0  96   0  96  12   6   8
T |  96   0  12   0  96   0  96   0  96  96   0   0   0   0   0   0   0  57   8   6

scan!

home
updated Mon Dec 16 13:45:44 2024