8vn9_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH8.0 (TRIS) WITH 500 UM MG2+ FOR 80S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.69, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn9_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vn9_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=21.253 IC/col=1.063 n_of_columns=20

specificity:

A |   0   0   9   0   0   0   3   7  10   0  96  82   0  69   0  96   0   5   0  81
C |   0   0   5  96   0  96  59  86   5   0   0   6   7   0   0   0   0  29  96   5
G |   0  96  79   0   0   0   0   3   5   0   0   3  88  26  96   0  96   7   0   3
T |  96   0   3   0  96   0  34   0  76  96   0   5   1   1   0   0   0  55   0   7

scan!

home
updated Fri Aug 1 20:48:22 2025