8vn9_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH8.0 (TRIS) WITH 500 UM MG2+ FOR 80S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.69, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vn9_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vn9_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.240 IC/col=1.062 n_of_columns=20

specificity:

A |   6   0  23   0   0   0   0   3   3   0  96  74   0  48   0  96   0   3   0  96
C |   5   0   3  96   0  96  69  90  13   0   0   3   1   0   0   0   0  55  96   0
G |   5  96  67   0   0   0   1   3   5   0   0  13  90  48  96   0  96   3   0   0
T |  80   0   3   0  96   0  26   0  75  96   0   6   5   0   0   0   0  35   0   0

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updated Mon Dec 16 13:46:05 2024