8vnh_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MN2+ FOR 80S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.76, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnh_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnh_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=19.102 IC/col=0.955 n_of_columns=20

specificity:

A |   8   0  24   0   0   0   8   3  11   0  93  74   1  34   0  83   0  24   0  96
C |   1   0  24  96   0  96  29  86   9   0   0   1   5   1   0   0   0  24  96   0
G |   3  96  24   0   0   0   3   5   3   0   3  16  87  58  96  13  96  24   0   0
T |  84   0  24   0  96   0  56   2  73  96   0   5   3   3   0   0   0  24   0   0

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updated Thu Sep 12 11:04:00 2024