8vnj_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MN2+ FOR 120S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.61, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnj_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnj_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=18.861 IC/col=0.943 n_of_columns=20

specificity:

A |   0   0  24   0   0   0   3   8   5   0  96  67   0  57   0  96   0  24   0  76
C |   0   0  24  96  20  96  31  82   9   0   0  13   1   1   0   0   0  24  96   7
G |   0  96  24   0   0   0   3   5  11   0   0   5  92  37  96   0  96  24   0  10
T |  96   0  24   0  76   0  59   1  71  96   0  11   3   1   0   0   0  24   0   3

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updated Fri Aug 1 20:50:04 2025