8vnm_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH6.0 (K+ MES) WITH 500 UM MN2+ FOR 320S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.59, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnm_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnm_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=20.659 IC/col=1.033 n_of_columns=20

specificity:

A |   0   0  10   0   0   0   2  10  12   0  96  67   2  69   0  96   0  24   0  96
C |   0   0   5  96   0  96   2  77  10   2   0  12   4   2   0   0   0  24  96   0
G |   0  96  79   0   0   0   4   7   7   1   0  10  85  23  96   0  96  24   0   0
T |  96   0   2   0  96   0  88   2  67  93   0   7   5   2   0   0   0  24   0   0

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updated Mon Dec 16 13:48:17 2024