8vnp_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 0.2 M SODIUM MALONATE
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.79, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnp_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnp_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.165 IC/col=1.058 n_of_columns=20

specificity:

A |   3   0  67   0   0   0   2   3   3   0  96  77   1  71   0  96   0   3   0  96
C |   6   0   9  96   0  96  32  86   3   0   0   5   3   3   0   0   0  74  96   0
G |   5  96  17   0   0   0   1   7  10   0   0   9  86  21  96   0  96   3   0   0
T |  82   0   3   0  96   0  61   0  80  96   0   5   6   1   0   0   0  16   0   0

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updated Mon Dec 16 13:48:38 2024