8vnp_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 0.2 M SODIUM MALONATE
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.79, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnp_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnp_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.274 IC/col=1.064 n_of_columns=20

specificity:

A |   4   0  65   0   0   0   0   1  13   0  96  74   0  51   0  96   0   5   0  96
C |   1   0   7  96   0  96  15  90   3   0   0  14   5   0   0   0   0  59  96   0
G |   3  96  19   0   0   0   1   3   3   0   0   5  84  44  96   0  96   6   0   0
T |  88   0   5   0  96   0  80   2  77  96   0   3   7   1   0   0   0  26   0   0

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updated Fri Aug 1 20:51:06 2025