8vnp_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 0.2 M SODIUM MALONATE
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.79, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnp_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnp_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.295 IC/col=1.065 n_of_columns=20

specificity:

A |   5   0  28   0   0   0   0   3   7   0  96  72   0  29   0  96   0   5   0  96
C |   1   0   8  96   0  96  18  88   4   0   0  12   5   3   0   0   0  71  96   0
G |   7  96  53   0   0   0   0   5   1   0   0   3  88  63  96   0  96   3   0   0
T |  83   0   7   0  96   0  78   0  84  96   0   9   3   1   0   0   0  17   0   0

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updated Thu Sep 12 11:04:54 2024