8vnq_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE H98A I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 1 MM MN2+ FOR 1800S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.93, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnq_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnq_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=18.706 IC/col=0.985 n_of_columns=19

specificity:

A |   2   0  24   0   0   0   2   2   4   1  93  86   4  81   0  74   0   4   0
C |   2   0  24  96   0  96   4  86   6   2   0   4   9   7   0   0   0  25  96
G |   4  96  24   0   0   0   4   7   9   0   2   2  74   6  96  22  96   9   0
T |  88   0  24   0  96   0  86   1  77  93   1   4   9   2   0   0   0  58   0

scan!

home
updated Thu Jan 8 13:19:15 2026