8vnr_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE H98A I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 1 MM MN2+ FOR 600S AND THEN 100 MM IMIDAZOLE FOR 15 HRS
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.98, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnr_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnr_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=20.198 IC/col=1.063 n_of_columns=19

specificity:

A |   0  21   0   0   0   1   3  10   0  96  82   0  86   0  96   0   7   0  80
C |   0   7  96   0  96  62  86   1   0   0   1   5   3   0   0   0  59  96   3
G |  96  63   0   0   0   1   7   1   0   0   3  88   6  96   0  96   3   0   6
T |   0   5   0  96   0  32   0  84  96   0  10   3   1   0   0   0  27   0   7

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updated Thu Sep 12 11:05:16 2024