8vnr_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE H98A I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 1 MM MN2+ FOR 600S AND THEN 100 MM IMIDAZOLE FOR 15 HRS
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.98, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnr_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnr_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasalchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=20.110 IC/col=1.058 n_of_columns=19

specificity:

A |   3   0  24   0   0   0   0   5  12   0  96  71   0  32   0  96   0  10   0
C |   1   0   3  96   0  96   2  90   5   0   0   3   9   1   0   0   0  53  96
G |   6  96  61   0   0   0   0   1   7   0   0  15  84  63  96   0  96   1   0
T |  86   0   8   0  96   0  94   0  72  96   0   7   3   0   0   0   0  32   0

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updated Mon Dec 16 13:49:10 2024