8vnu_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE H98A I-PPOI-DNA COMPLEX AT PH6.0 (K+ MES) WITH 70 MM TL+ FOR 1800S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vnu_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vnu_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=19.959 IC/col=1.050 n_of_columns=19

specificity:

A |   5   0  15   0   0   0   0   1   8   0  94  85   3  88   0  71   0   3   0
C |   6   0   3  96   0  96  14  92   3   0   0   5   5   3   0   0   0  26  96
G |   5  96  74   0   0   0   0   3   5   0   1   3  83   4  96  25  96  10   0
T |  80   0   4   0  96   0  82   0  80  96   1   3   5   1   0   0   0  57   0

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updated Mon Dec 16 13:49:29 2024