8wy5_AB : 3D-footprint complex

structure name	STRUCTURE OF GABIJA GAJA IN COMPLEX WITH DNA
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	8wy5_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8wy5_A interface=277,301,304, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtYfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs > 8wy5_B interface=282,306,309, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvvkkklnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtYfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs
interface signature	YKK/YKK

Estimated binding specificities ?

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# IC=5.300 IC/col=0.482 n_of_columns=11

specificity:

A |  67   0  96  67  24  24  24  24  24  11   0
C |  11   0   0   9  24  24  24  24  24   9   0
G |   9   0   0   9  24  24  24  24  24   9   0
T |   9  96   0  11  24  24  24  24  24  67  96

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updated Thu Jan 8 15:31:57 2026