8wy5_CD : 3D-footprint complex

structure name	STRUCTURE OF GABIJA GAJA IN COMPLEX WITH DNA
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	8wy5_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8wy5_C interface=301,304, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtyfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs > 8wy5_D interface=282,306,309, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvvkkklnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtYfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs
interface signature	KK/YKK

Estimated binding specificities ?

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# IC=5.976 IC/col=0.460 n_of_columns=13

specificity:

A |  52   0  96  81  24  24  24  24  24  16  24  86   4
C |  16   0   0   4  24  24  24  24  24   9  24   0   0
G |  19   0   0   4  24  24  24  24  24  19  24   6   0
T |   9  96   0   7  24  24  24  24  24  52  24   4  92

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updated Mon Dec 16 15:47:34 2024