8wy5_CD : 3D-footprint complex

structure name	STRUCTURE OF GABIJA GAJA IN COMPLEX WITH DNA
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	8wy5_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8wy5_C interface=301,304, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtyfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs > 8wy5_D interface=282,306,309, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvvkkklnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtYfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs
interface signature	KK/YKK

Estimated binding specificities ?

readout + contact

# IC=5.727 IC/col=0.441 n_of_columns=13

specificity:

A |  87   3  24  63  24  24  24  24  24   6   0  84  15
C |   3   0  24  11  24  24  24  24  24   3   0   3  13
G |   3   5  24  15  24  24  24  24  24   3   0   3   7
T |   3  88  24   7  24  24  24  24  24  84  96   6  61

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updated Thu Jan 8 15:32:32 2026