8x51_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF GABIJA GAJA IN COMPLEX WITH DNA(FOCUSED REFINEMENT)
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	8wy5_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8x51_A interface=301,304, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtyfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs > 8x51_B interface=282,306,309, mkfsnitiknfrnfekvninldnknvifgmndigktnflyalrflldkeirkfgfnksdyhkhdtskkieiiltldlsnyekdedtkklisvvkgartsanadvfyialeskyddkelygniilkwgseldnlidipgrgninaldnvfkviyinpkiviylieepeislhrsmqialskqlfeqstykyfflsthspellyemdntrlirvhstekvvcsshmynvvkkklnkalssalfaervlliegpsekilfekvldevepeyelnggfllevggtYfnhyvctlndlgithiiktdndlKskKgkkgvyellglnrclnllgrenldeitidipedikgkkkkerlnerkkeifkqyknevgeflgeriylseidlendlysaigesmkrifenedpvhylqksklfnmvelvnnlstkdcfdvfehekfaclkelvgs
interface signature	KK/YKK

Estimated binding specificities ?

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# IC=0.361 IC/col=0.028 n_of_columns=13

specificity:

A |  45  23  34  38  24  24  24  22  24  19  22  38  20
C |  19  21  20  19  24  24  24  25  24  20  25  19  19
G |  16  21  20  20  24  24  24  27  24  19  22  19  19
T |  16  31  22  19  24  24  24  22  24  38  27  20  38

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updated Mon Dec 16 15:52:00 2024