interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameBACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO DNA
(Transcription factor CBFNF-Yarchaeal histone domain-containing protein)
referenceHartmann et al. 'Nucleic ? ? 2024
sourceBdellovibrio bacteriovorus HD100
experimentX-ray (resolution=1.95, R-factor=0.223)
structural superfamilyHistone-fold;
multimeric complexes9ezz_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --------KG--                                                +7nkx_f    
                                                    +---------5 
  ----RG------                                      !         +8jla_C    
                                                  +-9 
  --KT--------   L                                ! !        +-7cvo_A    
                                                  ! +--------6 
  ----RA------                             +-----10          ! +1zla_C    
                                           !      !          +-4 
  ----RG------                             !      !            +8ox0_C    
                                           !      !  
  ----RA----RA                          +-13      +------------6a5l_g    
                                        !  !  
  ----RT------                          !  !                   +7zs9_e    
                                        !  !    +--------------1 
  ----RT------                          !  !    !              +8grq_A    
                                        !  +---12  
  ----RG------                          !       !             +7ccr_A    
                                 +-----14       +-------------3 
  LC--RT------                   !      !                     +8hr1_E    
                                 !      !  
  ----RC------                   !      !                +---7xyf_B    
                                 !      !     +----------7 
  ----RT------                   !      !     !          !   +7kbd_C    
                              +-15      !     !          +---2 
  ----RG------                !  !      +----11              +5x0y_G    
                              !  !            !  
  LA--RG------                !  !            !    +---------7unc_a    
                           +-16  !            +----8 
  ------RA----             !  !  !                 +---------6g0l_D    
                           !  !  !  
  IT----------          +-17  !  +---------------------------3wkj_D    
                        !  !  !  
  ----RG------          !  !  +----------------------------6iy2_A    
                     +-18  !  
  LT--RC------       !  !  +----------------------------3kwq_E    
                   -19  !  
  LT--RC------       !  +----------------------------4xzq_E    
                     !  
  QC--RG------       +----------------------------7y7i_E    
                   

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updated Wed Dec 18 20:10:25 2024