interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameBACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO DNA
(Transcription factor CBFNF-Yarchaeal histone domain-containing protein)
referenceHartmann et al. 'Nucleic ? ? 2024
sourceBdellovibrio bacteriovorus HD100
experimentX-ray (resolution=1.95, R-factor=0.223)
structural superfamilyHistone-fold;
multimeric complexes9ezz_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --------KG--                                        +7nkx_f    
                                     +----------------2 
  ------RA----                   +---8                +7e9c_F    
                                 !   ! 
  ------RC----                   !   +----------------7ux9_E    
                                 !  
  --KT--------   L               !                    +-7cvo_A    
                                 !      +-------------5 
  ------RA--RA                   !      !             ! +6a5l_g    
                              +-11      !             +-3 
  ------RC----                !  !    +-7               +7yqk_C    
                              !  !    ! ! 
  ------RT----                !  !    ! !               +7kbd_C    
                              !  !  +-9 +---------------4 
  ------RG----                !  !  ! !                 +8upf_G    
                              !  !  ! ! 
  LA----RG----          +----12  +-10 !      +----------7unc_a    
                        !     !     ! +------6 
  ----HG------          !     !     !        +----------8rbx_V    
                        !     !     !  
  ------RT----          !     !     +------------------7zs9_e    
                     +-13     !  
  ------RG----       !  !     !                      +7ccr_A    
                     !  !     +----------------------1 
  ------RT----     -14  !                            +6px1_A    
                     !  !  
  QC----RG----       !  +----------------------------7y7i_E    
                     !  
  IT----------       +----------------------------3wkj_D    
                   

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updated Sun Jan 11 01:59:25 2026