interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameBACTERIAL HISTONE PROTEIN HBB FROM BDELLOVIBRIO BACTERIOVORUS BOUND TO DNA
(Transcription factor CBFNF-Yarchaeal histone domain-containing protein)
referenceHartmann et al. 'Nucleic ? ? 2024
sourceBdellovibrio bacteriovorus HD100
experimentX-ray (resolution=1.95, R-factor=0.223)
structural superfamilyHistone-fold;
multimeric complexes9ezz_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --------KG--                                          +7nkx_f    
                                              +---------4 
  ----RG------                                !         +8jla_C    
                                       +------9 
  --KT--------   L                     !      !        +-7cvo_A    
                                       !      +--------5 
  ----RA------                         !               ! +1zla_C    
                                       !               +-3 
  ----RG------                         !                 +8ox0_C    
                                       !  
  ----RC------                         !                 +---7xyf_B    
                                       !        +--------6 
  ----RT------                    +---14        !        !   +7kbd_C    
                                  !    !        !        +---2 
  ----RA----RA                    !    !     +-10            +6a5l_g    
                                  !    !     !  !  
  ----RG------                    !    !     !  !  +---------7ccr_A    
                                  !    !  +-12  +--7 
  ------RA----                    !    !  !  !     +---------6g0l_D    
                                  !    !  !  !  
  LA--RG------                    !    !  !  !     +---------7unc_a    
                               +-15    !  !  +-----8 
  ----RG------                 !  !    +-13        +---------5x0y_G    
                               !  !       !  
  ----RT------                 !  !       !                 +7zs9_e    
                               !  !       !  +--------------1 
  ----RT------             +--16  !       +-11              +8grq_A    
                           !   !  !          !  
  ----RG------             !   !  !          +--------------6iy2_A    
                           !   !  !  
  LC--RT------          +-17   !  +----------------------8hr1_E    
                        !  !   !  
  LT--RC------          !  !   +------------------------4xzq_E    
                     +-18  !  
  IT----------       !  !  +----------------------------3wkj_D    
                   -19  !  
  LT--RC------       !  +----------------------------3kwq_E    
                     !  
  QC--RG------       +----------------------------7y7i_E    
                   

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updated Mon Aug 4 02:47:38 2025