8in8_BC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE TARGET SSDNA-BOUND SIR2-APAZ/AGO-GRNA QUATERNARY COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;DHS-like NAD/FAD-binding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8in8_B interface=85,86, sfpalrtnalpvvtqsircgvvtltfselkerisqkspkalltytekvlflggepeirkifsndeinsigqyyideiaqsvaasTFlksfveeailtallrekpilhrvrhrthyavipnasakddrfldlrkavgfkgdlgyitgnvtnakelswaeavsirleerggklwimlkpeiwikpldrreeatdfirsrrryrfnqcsyqildawikilfgsiggggtvniscfpdaefkaefeigtrtafslgvg > 8in8_C interface=76,77,79,80,81,187,391,393,396,397, nlsqlaahstipeplllfkdnrtdthplrglsqygpysacfnlpgqvrlaylaptehmrkldaivrelqnpatpkEAtNYYveyggfekvfkvplvmpqehlrclaldechgvaangnglaladkivqsmsglfrqkhafdvllvylpaswkkcfeydgfdlhdrikakvaplnlpiqiindtaltRqcranvmwgvsvalyakaggipwkladwdkdeayiglsyaikknaegqeyttccsqvfdpdgtgfefvaydtrefitdrkgnpylsyqemqsvlskslhlyqsshngrmprkifihktthftedeiqgafdsfsssteielvqiiqstnwyglkvdgkkgdkpvapasypvdrglyqpltesecllwtqgsvmgvnqqnpgqpVfKeaALtplpnpimlrrfsgnggwhatcssilaltkvdwnnntlykklpvtlvysqvfadvvkqtpeivneiydyrffm
interface signature	TF/EANYYRVKAL

Estimated binding specificities ?

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# IC=3.386 IC/col=0.226 n_of_columns=15

specificity:

A |  14   9  24  24  24  24  24  24  24  24  24  31  19   0  96
C |  14  67  24  24  24  24  24  24  24  24  24  23  19   0   0
G |  14  11  24  24  24  24  24  24  24  24  24  21  19   0   0
T |  54   9  24  24  24  24  24  24  24  24  24  21  39  96   0

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updated Mon Dec 16 04:59:57 2024