1a6y_AB : 3D-footprint complex

structure name	REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
reference	Khorasanizadeh et al. Mol.Cell 1 849 1998
source	Homo sapiens
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1a6y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1a6y_A interface=14,21,24,28,29,76, llckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr > 1a6y_B interface=24,27,31,32,81, gmvllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrfgRipk
interface signature	HEKRRF/EKRRR

Estimated binding specificities ?

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# IC=11.098 IC/col=0.793 n_of_columns=14

specificity:

A |   7   0  63   0   0  24  24  24  11   0  96   0   0   2
C |   5   1  11  96  96  24  24  24   5   0   0  96  96  16
G |  11  90  11   0   0  24  24  24  13  96   0   0   0   5
T |  73   5  11   0   0  24  24  24  67   0   0   0   0  73

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updated Mon Sep 9 11:49:31 2024