1apl_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
reference	Wolberger et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1apl_C interface=1,5,48,51,52,55, YrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1apl_D interface=4,47,50,51,54, rghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt
interface signature	YRNSNR/RNSNR

Estimated binding specificities ?

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# IC=13.381 IC/col=0.836 n_of_columns=16

specificity:

A |   4   0   4   0  67  24   0   4  24  86  12  24   0  96   0  87
C |   3   1   3   0  12  24   0   3  24   4   3  24   4   0  96   3
G |   3   3  86   0   6  24   0   3  24   3   5  24   0   0   0   3
T |  86  92   3  96  11  24  96  86  24   3  76  24  92   0   0   3

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updated Fri Dec 13 08:45:13 2024