1apl_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
reference	Wolberger et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1le8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1apl_C interface=1,5,48,51,52,55, YrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1apl_D interface=4,47,50,51,54, rghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt
interface signature	YRNSNR/RNSNR

Estimated binding specificities ?

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# IC=13.351 IC/col=0.834 n_of_columns=16

specificity:

A |   4   0   0  96  24  58   4  24  72  92  24  13  96   0  89  75
C |   0   0   0   0  24  20   0  24   0   3  24  22   0  96   0   0
G |   0  96   0   0  24   0   0  24  24   1  24  17   0   0   3  21
T |  92   0  96   0  24  18  92  24   0   0  24  44   0   0   4   0

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updated Tue Jul 29 14:21:11 2025