1apl_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
reference	Wolberger et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1le8_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1apl_C interface=1,5,48,51,52,55, YrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1apl_D interface=4,47,50,51,54, rghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt
interface signature	YRNSNR/RNSNR

Estimated binding specificities ?

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# IC=13.193 IC/col=0.825 n_of_columns=16

specificity:

A |   3   0   0  90  24  70   0  24  90  87  24   6  96   0  90  73
C |   3   0   0   0  24   9   1  24   3   3  24  12   0  96   0  12
G |   1  96   0   3  24   5  12  24   3   3  24   3   0   0   3   8
T |  89   0  96   3  24  12  83  24   0   3  24  75   0   0   3   3

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updated Mon Sep 9 11:54:53 2024