1apl_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
reference	Wolberger et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1k61_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1apl_C interface=1,5,48,51,52,55, YrghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt > 1apl_D interface=4,47,50,51,54, rghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt
interface signature	YRNSNR/RNSNR

Estimated binding specificities ?

readout + contact

# IC=13.346 IC/col=0.834 n_of_columns=16

specificity:

A |   0   0   0   0  35  24   0   9  24  73  28  24   0  96   0  92
C |  10   0   1   0  28  24   3   9  24  14   0  24   0   0  96   0
G |   0   0  92   0   6  24   0   2  24   9   1  24   0   0   0   0
T |  86  96   3  96  27  24  93  76  24   0  67  24  96   0   0   4

scan!

home
updated Wed Jun 24 08:49:09 2026