1bdt_ABCD : 3D-footprint complex

structure name	WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX
reference	Schilbach et al. Proc.Natl.Acad.Sci.USA 96 811 1999
source	Enterobacteria phage P22
experiment	X-ray (resolution=2.50, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1bdt_A interface=4,9,11,13, mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegrig > 1bdt_B interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga > 1bdt_C interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr > 1bdt_D interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr
interface signature	MQNR/MSQNR/MSQNR/MSQNR

Estimated binding specificities ?

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# IC=15.816 IC/col=0.832 n_of_columns=19

specificity:

A |   0  36  11   0  96   0  96  24  24  24  24  11   0   0   0  96  20  92  96
C |   0   1   5   0   0   0   0  24  24  24  24  15   0  96   0   0  18   3   0
G |   0  48  73   0   0  96   0  24  24  24  24  11   0   0   0   0  14   0   0
T |  96  11   7  96   0   0   0  24  24  24  24  59  96   0  96   0  44   1   0

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updated Fri Dec 13 08:47:21 2024