1bdt_ABCD : 3D-footprint complex

structure name	WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX
reference	Schilbach et al. Proc.Natl.Acad.Sci.USA 96 811 1999
source	Enterobacteria phage P22
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Ribbon-helix-helix;
reference complex	1bdt_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1bdt_A interface=4,9,11,13, mkgMskmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegrig > 1bdt_B interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegriga > 1bdt_C interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr > 1bdt_D interface=4,5,9,11,13, mkgMSkmpQfNlRwprevldlvrkvaeengrsvnseiyqrvmesfkkegr
interface signature	MQNR/MSQNR/MSQNR/MSQNR

Estimated binding specificities ?

readout + contact

# IC=16.029 IC/col=0.844 n_of_columns=19

specificity:

A |   0   0  52   0  96   0  96  49  24  24  24  24   0   0   0  96   4   4  96
C |   0   1  13   0   0   0   0  13  24  24  24  24   0  96   0   0  80  58   0
G |   0   4  23   0   0  96   0  13  24  24  24  24   0   0   0   0   4   4   0
T |  96  91   8  96   0   0   0  21  24  24  24  24  96   0  96   0   8  30   0

scan!

home
updated Tue Jul 29 14:23:24 2025