1by4_BC : 3D-footprint complex

structure name	STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA
reference	Devarakonda et al. J.Mol.Biol. 296 509 2000
source	Homo sapiens
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1by4_B interface=26,29,33,34, gsftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer > 1by4_C interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer
interface signature	EKKR/EKKR

Estimated binding specificities ?

readout + contact

# IC=10.404 IC/col=0.800 n_of_columns=13

specificity:

A |   0   0   8   0  72  24  24  24   0   0   0   0  72
C |   0   0   8  96   8  24  24  24   0   0   8  96   8
G |  96  96   8   0   8  24  24  24  96  96   8   0   8
T |   0   0  72   0   8  24  24  24   0   0  80   0   8

scan!

home
updated Mon Sep 9 11:58:36 2024