1by4_BC : 3D-footprint complex

structure name	STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA
reference	Devarakonda et al. J.Mol.Biol. 296 509 2000
source	Homo sapiens
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1by4_B interface=26,29,33,34, gsftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer > 1by4_C interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeer
interface signature	EKKR/EKKR

Estimated binding specificities ?

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# IC=10.335 IC/col=0.795 n_of_columns=13

specificity:

A |   0   0   7   0  73  24  24  24   0   0   7   0  75
C |   0   0   7  96   7  24  24  24   0   0   7  96   7
G |  96  96   9   0   9  24  24  24  96  96   7   0   7
T |   0   0  73   0   7  24  24  24   0   0  75   0   7

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updated Sun Jan 4 20:50:05 2026