1ddn_ABCD : 3D-footprint complex

structure name	DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
reference	Vanderspek et al.
source	Corynebacterium diphtheriae
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ddn_A interface=35,37,38,41,45,58, dlvdttemylrtiyeleeegvtplrariaerleqSgPTvsQtvaRmerdglvvvasdRslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl > 1ddn_B interface=35,37,38,40,41,45, dlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl > 1ddn_C interface=35,37,38,41,45, dlvdttemylrtiyeleeegvtplrariaerleqSgPTvsQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl > 1ddn_D interface=35,37,38,40,41,45, dlvdttemylrtiyeleeegvtplrariaerleqSgPTvSQtvaRmerdglvvvasdrslqmtptgrtlatavmrkhrlaerlltdiigldinkvhdeadrwehvmsdeverrlvkvl
interface signature	SPTQRR/SPTSQR/SPTQR/SPTSQR

Estimated binding specificities ?

readout + contact

# IC=14.807 IC/col=0.987 n_of_columns=15

specificity:

A |  83   8   0   4  24  96  96   0   0   0  75   0   0   8   1
C |   4  12   0   8  24   0   0   0  96   0   8   0  96  64   0
G |   4  68  96   4  24   0   0  96   0   0   4   0   0  12   4
T |   5   8   0  80  24   0   0   0   0  96   9  96   0  12  91

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updated Fri Dec 13 08:55:33 2024