1ga5_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT
reference	Rastinejad et al.
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1a6y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ga5_A interface=22,25,29,30,77,79, vllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgRipk > 1ga5_B interface=15,22,25,29,30,77, vllckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr
interface signature	EKRRFR/HEKRRF

Estimated binding specificities ?

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# IC=12.268 IC/col=0.722 n_of_columns=17

specificity:

A |   6   0   9   0   0  24  24  24   2   0  92   4   0  10  24  24   9
C |   4   0  77  96  91  24  24  24   4   0   0  91  96   9  24  24   9
G |   4  96   6   0   4  24  24  24   4  96   0   0   0   4  24  24   5
T |  82   0   4   0   1  24  24  24  86   0   4   1   0  73  24  24  73

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updated Mon Sep 9 12:20:14 2024