1ga5_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT
reference	Rastinejad et al.
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ga5_E interface=22,25,29,30,77,79, vllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgRip > 1ga5_F interface=22,25,29,30,77, vllckvcgdvasgfhygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFg
interface signature	EKRRFR/EKRRF

Estimated binding specificities ?

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# IC=11.392 IC/col=0.876 n_of_columns=13

specificity:

A |   0   0   0   0  78  19  24  24   0   0   8   0  89
C |   0   0   0  96   6  57  24  24   0   0  12  96   7
G |  96  96   0   0   6  14  24  24  96  83  12   0   0
T |   0   0  96   0   6   6  24  24   0  13  64   0   0

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updated Fri Dec 13 09:13:06 2024