1gt0_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A POU/HMG/DNA TERNARY COMPLEX
reference	Wilmanns et al. 'Genes 17 2048 2003
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;HMG-box;
reference complex	1o4x_A 1o4x_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1gt0_C interface=41,42,43,46,47,84,126,129,130,133, psdleeleqfaktfkqrriklgftqgdvglamgklygndfSQTtiSRfealnlsfknmsklkpllekwlndaenlglsrrrkkRtsietnirvaleksflenqkptseeitmiadqlnmekevirVwfSNrrQkekr > 1gt0_D interface=5,8,10,11,18,30,31,34,72,76, drvkRpmNaFMvwsrgqRrkmaqenpkmhNSeiSkrlgaewkllsetekrpfideakrlralhmkehpdykYrprRktk
interface signature	SQTSRRVSNQ/RNFMRNSSYR

Estimated binding specificities ?

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# IC=18.376 IC/col=1.021 n_of_columns=18

specificity:

A |  88   0   8  88   0   0  96   0   8   8  24  24  96   0  96  96  96   0
C |   0   0   0   0   0  96   0   0  72  72  24  24   0  88   0   0   0   0
G |   0   0   8   8  96   0   0   0   8   8  24  24   0   0   0   0   0  96
T |   8  96  80   0   0   0   0  96   8   8  24  24   0   8   0   0   0   0

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updated Mon Sep 9 12:20:58 2024