| structure name | PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA. (PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN) |
| reference | Gomis-Ruth et al. Structure 10 701 2002 |
| source | ESCHERICHIA COLI |
| experiment | X-ray (resolution=2.50, R-factor=0.247) |
| structural superfamily | C-terminal effector domain of the bipartite response regulators; |
| sequence family | Transcriptional regulatory protein, C ter; |
| redundant complexes | 2z33 3t72 |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RTDVRRR |
Estimated binding specificities ?
| contact |  |
A | 6 3 13 0 24 24 18 96 0 84 C | 84 3 18 0 24 24 5 0 96 3 G | 3 6 14 0 24 24 59 0 0 3 T | 3 84 51 96 24 24 14 0 0 6scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: PHOB | ||
| TGTCA | PubMed | 1gxp_A(4.44e-03), 1gxp_AB(4.80e-05), 1gxp_EF(4.44e-05) |
Dendrogram of similar interfaces ?
matrix format--------RTTT--DAVT----RGRG----RA L +-1gxp_A +----------4 --------NTVC--ECSTYT--STYC----RA L ! +-5ed4_A +----5 --------RG----DTVT----STRG----WT L ! ! +6lxn_A +--------7 +------------1 --------RG----DTVT----ST--RG--RC L ! ! +4nhj_A ! ! --------RCTT----TTHT--LA-------- L ! +-----------------7e1b_B ! ----------------------------YG-- +-10 +2heo_D ! ! +-----------------3 SGQG--YCNC---------------------- ! ! +------8 +2ve9_C ! ! ! ! ------------QTNAST--RGHTNTSTLA-- L ! ! ! +------------------2hdc_A ! +-9 --------KGTC--KGTCHT------------ L -11 ! +4wuh_B ! ! +--------------2 ----TC--KTTC--KGTCHT--ST-------- L ! +----------6 +7ve5_B ! ! --------SCTA--KTVCHT--KG-------- L ! +--------------1je8_F ! ----TTRCECRT--RCQT-------------- L +----------------------------7kuf_B |
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updated Mon Dec 16 17:51:55 2024