1h0m_AB : 3D-footprint complex

structure name	THREE-DIMENSIONAL STRUCTURE OF THE QUORUM SENSING PROTEIN TRAR BOUND TO ITS AUTOINDUCER AND TO ITS TARGET DNA
reference	De Francesco et al.
source	Rhizobium radiobacter
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h0m_A interface=198,199,202,203,206, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttdaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli > 1h0m_B interface=198,199,202,203,206,207, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli
interface signature	YNRVR/YNRVRE

Estimated binding specificities ?

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# IC=4.114 IC/col=0.343 n_of_columns=12

specificity:

A |   0   2  21  29  24  25  23  21  22  21   4  84
C |   0   2  33  22  24  25  24  27  22  21  85   3
G |   1  89  21  23  24  22  24  23  22  34   4   5
T |  95   3  21  22  24  24  25  25  30  20   3   4

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updated Fri Dec 13 09:14:52 2024