1h0m_AB : 3D-footprint complex

structure name	THREE-DIMENSIONAL STRUCTURE OF THE QUORUM SENSING PROTEIN TRAR BOUND TO ITS AUTOINDUCER AND TO ITS TARGET DNA
reference	De Francesco et al.
source	Rhizobium radiobacter
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	1l3l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h0m_A interface=198,199,202,203,206, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttdaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli > 1h0m_B interface=198,199,202,203,206,207, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli
interface signature	YNRVR/YNRVRE

Estimated binding specificities ?

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# IC=4.089 IC/col=0.341 n_of_columns=12

specificity:

A |   4   4  20  29  23  26  23  23  23  21   2  94
C |   4   3  36  22  25  24  22  25  22  20  89   0
G |   4  85  20  22  25  24  24  23  22  35   2   2
T |  84   4  20  23  23  22  27  25  29  20   3   0

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updated Tue Jul 29 14:50:13 2025