1h0m_CD : 3D-footprint complex

structure name	THREE-DIMENSIONAL STRUCTURE OF THE QUORUM SENSING PROTEIN TRAR BOUND TO ITS AUTOINDUCER AND TO ITS TARGET DNA
reference	De Francesco et al.
source	Rhizobium radiobacter
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	1l3l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h0m_C interface=196,197,200,201,204, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrtaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli > 1h0m_D interface=197,198,201,202,205,206, qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktmeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli
interface signature	YNRVR/YNRVRE

Estimated binding specificities ?

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# IC=6.063 IC/col=0.466 n_of_columns=13

specificity:

A |   8   0   0  16  24  24  24  24  24  24  16   0  96
C |   8   0   0  40  24  24  24  24  24  24   8  96   0
G |  16   0  96  24  24  24  24  24  24  24  56   0   0
T |  64  96   0  16  24  24  24  24  24  24  16   0   0

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updated Mon Sep 9 12:22:31 2024