1h88_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
reference	Tahirov et al.
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=2.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h88_A interface=12,15,18,19,22,23, vdkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe > 1h88_B interface=13,16,17,19,20,23,24, tvdkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe > 1h88_C interface=90,93,94,140,141,144,145,148,149, gktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgpwtkeedqrviklvqkygpkrwsviakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtDNaiKNhwNStmr
interface signature	RNAVSR/RNNAVSR/KREDNKNNS

Estimated binding specificities ?

readout + contact

# IC=17.625 IC/col=0.881 n_of_columns=20

specificity:

A |   8   0   0   0   0   0  24  96  96  24  24  24  24   4  96  96   0   4   0  80
C |   4   0   0   0  96   0  60   0   0  24  24  24  24   4   0   0  96   8   4   4
G |  76   0  96  96   0  96   4   0   0  24  24  24  24   4   0   0   0  68  92   8
T |   8  96   0   0   0   0   8   0   0  24  24  24  24  84   0   0   0  16   0   4

scan!

home
updated Fri Dec 13 09:15:48 2024