1h88_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
reference	Tahirov et al.
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Leucine zipper domain;
reference complex	6mg1_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h88_A interface=12,15,18,19,22,23, vdkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe > 1h88_B interface=13,16,17,19,20,23,24, tvdkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe > 1h88_C interface=90,93,94,140,141,144,145,148,149, gktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgpwtkeedqrviklvqkygpkrwsviakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtDNaiKNhwNStmr
interface signature	RNAVSR/RNNAVSR/KREDNKNNS

Estimated binding specificities ?

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# IC=17.620 IC/col=0.881 n_of_columns=20

specificity:

A |   5   0  16   0   0   0  84  24  24  24  24   0   0   7   0   0   0   0  96   5
C |   7  91  62   0   0   0   2  24  24  24  24   0   0   5  96   0  96  96   0  67
G |   0   5  11  96   0   0   5  24  24  24  24   0   0  73   0  96   0   0   0   8
T |  84   0   7   0  96  96   5  24  24  24  24  96  96  11   0   0   0   0   0  16

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updated Tue Jul 29 14:51:08 2025