1h88_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
reference	Tahirov et al.
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Leucine zipper domain;
reference complex	6mg1_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h88_A interface=12,15,18,19,22,23, vdkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe > 1h88_B interface=13,16,17,19,20,23,24, tvdkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlpe > 1h88_C interface=90,93,94,140,141,144,145,148,149, gktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgpwtkeedqrviklvqkygpkrwsviakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtDNaiKNhwNStmr
interface signature	RNAVSR/RNNAVSR/KREDNKNNS

Estimated binding specificities ?

readout + contact

# IC=17.526 IC/col=0.876 n_of_columns=20

specificity:

A |  11   0   0   0   0   0  26  96  96  24  24  24  24   6  96  96   0   5   1  84
C |   3   0   0   0  96   0  57   0   0  24  24  24  24   7   0   0  96   7   7   3
G |  79   0  96  96   0  96   3   0   0  24  24  24  24   3   0   0   0  65  88   3
T |   3  96   0   0   0   0  10   0   0  24  24  24  24  80   0   0   0  19   0   6

scan!

home
updated Sun Jan 4 21:20:10 2026