1h8a_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
reference	Tahirov et al.
source	HOMO SAPIENS / AVIAN MYELOBLASTOSIS VIRUS
experiment	X-ray (resolution=2.23, R-factor=?)
structural superfamily	Leucine zipper domain;
reference complex	6mg1_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h8a_A interface=12,15,18,19,22,23, vdkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql > 1h8a_B interface=11,14,15,17,18,21,22, dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql > 1h8a_C interface=42,45,46,93,96,97,100,101, npelnkgpwtkeedqrviehvqkygpkrwsdiakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtdNavKNhwNStmrr
interface signature	RNAVSR/RNNAVSR/KRENKNNS

Estimated binding specificities ?

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# IC=18.874 IC/col=0.944 n_of_columns=20

specificity:

A |   4   0   4   0   8   0  80  24  24  24  24   0   0   4   0   0   0   0  96   4
C |   8  96  76   0   0   0   4  24  24  24   4   0   0   0  96   0  96  96   0  84
G |   4   0   8  96   0   0   4  24  24  24  64   0   0  88   0  96   0   0   0   4
T |  80   0   8   0  88  96   8  24  24  24   4  96  96   4   0   0   0   0   0   4

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updated Tue Jul 29 14:51:46 2025