1h8a_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
reference	Tahirov et al.
source	HOMO SAPIENS / AVIAN MYELOBLASTOSIS VIRUS
experiment	X-ray (resolution=2.23, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h8a_A interface=12,15,18,19,22,23, vdkhsdeykirRerNniAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql > 1h8a_B interface=11,14,15,17,18,21,22, dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql > 1h8a_C interface=42,45,46,93,96,97,100,101, npelnkgpwtkeedqrviehvqkygpkrwsdiakhlkgrigKqcRErwhnhlnpevkktswteeedriiyqahkrlgnrwaeiakllpgrtdNavKNhwNStmrr
interface signature	RNAVSR/RNNAVSR/KRENKNNS

Estimated binding specificities ?

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# IC=18.878 IC/col=0.944 n_of_columns=20

specificity:

A |   5   0   5   0   0   0  80  24  24  24  70   0   0   5   0   0   0   0  96   5
C |  11  96  71   0   0   0   6  24  24  24   0   0   0   0  96   0  96  96   0  80
G |   5   0  10  96   0   0   5  24  24  24  26   0   0  81   0  96   0   0   0   5
T |  75   0  10   0  96  96   5  24  24  24   0  96  96  10   0   0   0   0   0   6

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updated Fri Dec 13 09:16:20 2024