1h9t_AB : 3D-footprint complex

structure name	FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR
reference	Van Aalten et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=3.25, R-factor=?)
structural superfamily	Fatty acid responsive transcription factor FadR, C-terminal domain;"Winged helix" DNA-binding domain;
reference complex	1h9t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1h9t_A interface=31,40,41,42,45,46,61, aqspagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqknllaiqgr > 1h9t_B interface=31,40,41,42,45,46,61, aqspagfaeeyiiesiwnnrfppgtilpaeRelseligvTRTtlREvlqrlardgwltiqHgkptkvnnfwetsglniletlarldhesvpqlidnllsvrtnistifirtafrqhpdkaqevlatanevadhadafaeldynifrglafasgnpiyglilngmkglytrigrhyfanpearslalgfyhklsalcsegahdqvyetvrryghesgeiwhrmqknl
interface signature	RTRTREH/RTRTREH

Estimated binding specificities ?

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# IC=9.598 IC/col=0.873 n_of_columns=11

specificity:

A |  11   0   0   5  24   0  11  79   0   0  90
C |  11   0   0  13  24  96  11   5  96  96   0
G |  12  96  96  11  24   0  62   5   0   0   1
T |  62   0   0  67  24   0  12   7   0   0   5

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updated Mon Sep 9 12:23:57 2024