| structure name | FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR (FATTY ACID METABOLISM REGULATOR PROTEIN) |
| reference | Van Aalten et al. |
| source | ESCHERICHIA COLI |
| experiment | X-ray (resolution=3.25, R-factor=0.265) |
| structural superfamily | Fatty acid responsive transcription factor FadR, C-terminal domain;"Winged helix" DNA-binding domain; |
| sequence family | FadR Cterminal domain; Bacterial regulatory proteins, gntR family; |
| multimeric complexes | 1h9t_AB 1hw2_AB |
| redundant complexes |  1hw2_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RTRTREH |
Estimated binding specificities ?
| contact |  |
A | 24 0 0 12 24 0 C | 24 0 0 12 24 96 G | 12 96 96 24 24 0 T | 36 0 0 48 24 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: FADR | ||
| ATCTGGTACGACCAGAT | PubMed | 1h9t_B(1.91e-03), 1h9t_AB(2.93e-13), 1hw2_AB(2.86e-12), ... (total=4) |
| TGGTCTTACCA | PubMed | 1h9t_AB(6.21e-11), 1hw2_AB(5.16e-10), 1hw2_B(5.20e-03) |
| TACCGACCGNTNGGTN | PubMed | 1hw2_AB(9.89e-03) |
Dendrogram of similar interfaces ?
matrix format--------RG--TGRGTG--RTET----HA-- L +--1h9t_B +---------------------2 ------EGRG--TTRGTTTTRTET----HA-- L +-5 +--4p9u_F ! ! --------SGQG--YCNC-------------- ! +------------------------2ve9_C ! ------------------------YG------ --6 +-2heo_D ! +------1 ----------------TTHT--KG--RC---- L ! +-------3 +-7b0c_A ! ! ! RGRTKG-------------------------- L +---------4 +--------6lui_A ! --------TC--STKTPTTTFT--------RT +----------------4ass_H |
home
updated Fri Sep 13 15:38:09 2024