1hbx_ABG : 3D-footprint complex

structure name	TERNARY COMPLEX OF SAP-1 AND SRF WITH SPECIFIC SRE DNA
reference	Richmond et al. 'Embo 20 3018 2001
source	HOMO SAPIENS
experiment	X-ray (resolution=3.15, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hbx_A interface=4,7,22,27, gkkTrgRvkikmefidnklrrYttfsKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclnspd > 1hbx_B interface=3,6,22,25,26, kkTrgRvkikmefidnklrryTtfSKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclnspd > 1hbx_G interface=57,60,63,64, dsaitlwqfllqllqkpqnkhmicwtsndgqfkllqaeevarlwgirknkpnmnydKlsRalRYyyvkniikkvngqkfvykfvsypeilnmsrndyihsglyssftlnsln
interface signature	TRYK/TRTSK/KRRY

Estimated binding specificities ?

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# IC=16.839 IC/col=0.991 n_of_columns=17

specificity:

A |  78   0   0  90  75   5   0  85   2   0  68  24   2   0   0   0   0
C |  12  96   2   2   7   0   0   4   2   0   5  24   2   1  96  96   0
G |   4   0   4   0   2   3   0   5  78  96  10  24   4   2   0   0  96
T |   2   0  90   4  12  88  96   2  14   0  13  24  88  93   0   0   0

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updated Fri Dec 13 09:16:57 2024