1hcq_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS
reference	Schwabe et al.
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hcq_A interface=25,28,29,32,33, mketrycavcndyasgyhygvwscEgcKAffKRsiqghndymcpatnqctidknrrkscqacrlrkcyevgmmk > 1hcq_B interface=22,25,26,29,30, trycavcndyasgyhygvwscEgcKAffKRsiqghndymcpatnqctidknrrkscqacrlrkcyevgmmk
interface signature	EKAKR/EKAKR

Estimated binding specificities ?

readout + contact

# IC=10.496 IC/col=0.807 n_of_columns=13

specificity:

A |   0   0   8   0  69  24  24  24   8   0  96   0   0
C |   0   0  11  96   8  24  24  24   8   1   0  96  96
G |  96  96   8   0  11  24  24  24   8  87   0   0   0
T |   0   0  69   0   8  24  24  24  72   8   0   0   0

scan!

home
updated Fri Dec 13 09:17:30 2024