1hdd_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS
reference	Martin-Blanco et al.
source	Drosophila melanogaster
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1du0_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hdd_C interface=1,3,45,48,49,53, RpRtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfQNkraKikks > 1hdd_D interface=45,48, rprtafsseqlarlkrefnenrylterrrqqlsselglneaqikIwfQnkrakikks
interface signature	RRIQNK/IQ

Estimated binding specificities ?

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# IC=7.435 IC/col=0.620 n_of_columns=12

specificity:

A |   0  86  24  24  24   5  24  73   0   7  90   7
C |   0   0  24  24  24   7  24   7   0   5   0  79
G |   0   5  24  24  24   5  24   5   0   5   0   5
T |  96   5  24  24  24  79  24  11  96  79   6   5

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updated Mon Sep 9 12:24:59 2024