1hjb_DEF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
reference	Tahirov et al.
source	MUS MUSCULUS / HOMO SAPIENS
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1hjb_D interface=11,14,18,21,22, dkhsdeykirRerNniaVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlp > 1hjb_E interface=11,14,15,17,18,21,22, dkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkqlp > 1hjb_F interface=21,83,112,115,118, gelvrtdspnflcsvlpthwRcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrnataamknqvarfndlrfvgrsgRgksftltitvftnppqvatyhraikitvDgpRepRrh
interface signature	RNVSR/RNNAVSR/RRDRR

Estimated binding specificities ?

readout + contact

# IC=15.992 IC/col=0.888 n_of_columns=18

specificity:

A |  86  86   0   0  86   0  86  24  24  24   0   0   3   3   0  81  80  96
C |   3   3  96  96   3  96   3  24  24  24   0   9   3   3   0   9  10   0
G |   4   3   0   0   3   0   3  24  24  24   0   4   3  87  96   3   3   0
T |   3   4   0   0   4   0   4  24  24  24  96  83  87   3   0   3   3   0

scan!

home
updated Fri Dec 13 09:18:36 2024