1imh_CD : 3D-footprint complex

structure name	TONEBP/DNA COMPLEX
reference	Lopez-Rodriguez et al. Nat.Struct.Biol. 9 90 2002
source	Homo sapiens
experiment	X-ray (resolution=2.86, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1imh_C interface=30,33,35,36,39,177, kkspmlcgqypvksegkelkivvqpetqhRarYlTEgsRgsvkdrtqqgfptvkleghnepvvlqvfvgndsgrvkphgfyqacrvtgrnttpckevdiegttvievgldpsnnmtlavdcvgilklrnadvearigiagskkkstrarlvfrvnimrkdgstltlqtpsspilctQpagvpeilkkslhscsvkgeeevfligknflkgtkvifqenvsdenswkseaeidmelfhqnhlivkvppyhdqhitlpvsvgiyvvtnagrshdvqpftytpd > 1imh_D interface=33,35,36, kkspmlcgqypvksegkelkivvqpetqhrarYlTEgsrgsvkdrtqqgfptvkleghnepvvlqvfvgndsgrvkphgfyqacrvtgrnttpckevdiegttvievgldpsnnmtlavdcvgilklrnadvearigiagskkkstrarlvfrvnimrkdgstltlqtpsspilctqpagvpeilkkslhscsvkgeeevfligknflkgtkvifqenvsdenswkseaeidmelfhqnhlivkvppyhdqhitlpvsvgiyvvtnagrshdvqpftytpd
interface signature	RYTERQ/YTE

Estimated binding specificities ?

readout + contact

# IC=5.459 IC/col=0.496 n_of_columns=11

specificity:

A |   0  24  24  24  24  24  10  10   0   0  64
C |  96  24  24  24  24  24  12  10  96  96  10
G |   0  24  24  24  24  24  10   0   0   0  12
T |   0  24  24  24  24  24  64  76   0   0  10

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updated Fri Dec 13 09:22:54 2024