1imh_CD : 3D-footprint complex

structure name	TONEBP/DNA COMPLEX
reference	Lopez-Rodriguez et al. Nat.Struct.Biol. 9 90 2002
source	Homo sapiens
experiment	X-ray (resolution=2.86, R-factor=?)
structural superfamily	E set domains;p53-like transcription factors;
reference complex	1imh_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1imh_C interface=30,33,35,36,39,177, kkspmlcgqypvksegkelkivvqpetqhRarYlTEgsRgsvkdrtqqgfptvkleghnepvvlqvfvgndsgrvkphgfyqacrvtgrnttpckevdiegttvievgldpsnnmtlavdcvgilklrnadvearigiagskkkstrarlvfrvnimrkdgstltlqtpsspilctQpagvpeilkkslhscsvkgeeevfligknflkgtkvifqenvsdenswkseaeidmelfhqnhlivkvppyhdqhitlpvsvgiyvvtnagrshdvqpftytpd > 1imh_D interface=33,35,36, kkspmlcgqypvksegkelkivvqpetqhrarYlTEgsrgsvkdrtqqgfptvkleghnepvvlqvfvgndsgrvkphgfyqacrvtgrnttpckevdiegttvievgldpsnnmtlavdcvgilklrnadvearigiagskkkstrarlvfrvnimrkdgstltlqtpsspilctqpagvpeilkkslhscsvkgeeevfligknflkgtkvifqenvsdenswkseaeidmelfhqnhlivkvppyhdqhitlpvsvgiyvvtnagrshdvqpftytpd
interface signature	RYTERQ/YTE

Estimated binding specificities ?

readout + contact

# IC=5.371 IC/col=0.488 n_of_columns=11

specificity:

A |   0  24  24  24  24  24  12  10   0   0  64
C |  96  24  24  24  24  24  10  10  96  96  12
G |   0  24  24  24  24  24  10   2   0   0  10
T |   0  24  24  24  24  24  64  74   0   0  10

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updated Mon Sep 9 12:29:44 2024