1io4_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER
reference	Tahirov et al.
source	MUS MUSCULUS / HOMO SAPIENS
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1io4_A interface=10,13,14,16,17,20,21, khsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlf > 1io4_B interface=14,17,18,20,21,24,25, ktvdkhsdeykirRerNNiAVrkSRdkakmrnletqhkvleltaenerlqkkveqlsrelstlrnlfkql > 1io4_C interface=21,83,111,112,115,118, gelvrtdspnflcsvlpthwRcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrnataamknqvarfndlrfvgrsgRgksftltitvftnppqvatyhraikitVDgpRepRrh
interface signature	RNNAVSR/RNNAVSR/RRVDRR

Estimated binding specificities ?

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# IC=15.036 IC/col=0.884 n_of_columns=17

specificity:

A |   0   4   0   0   8  78  96  82  24  24  24   4   0   0   0   0   4
C |   0  17   0  96  80   4   0   4  24  24  24   4   0   0   0   0   4
G |   0   4   0   0   4  10   0   4  24  24  24   4  96   0  96  96  10
T |  96  71  96   0   4   4   0   6  24  24  24  84   0  96   0   0  78

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updated Fri Dec 13 09:23:10 2024