1jgg_AB : 3D-footprint complex

structure name	EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA
reference	Aggarwal et al. 'EMBO 14 6280 1995
source	Drosophila melanogaster
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1jgg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jgg_A interface=1,2,3,45,48,49,52,56, RYRtaftrdqlgrlekefykenyvsrprrcelaaqlnlpestikVwfQNrrMkdkRq > 1jgg_B interface=1,2,3,45,48,49,52,53,56, RYRtaftrdqlgrlekefykenyvsrprrcelaaqlnlpestikVwfQNrrMKdkRq
interface signature	RYRVQNMR/RYRVQNMKR

Estimated binding specificities ?

readout + contact

# IC=9.846 IC/col=0.985 n_of_columns=10

specificity:

A |   0  96  96   0  10  10  96  96   0   5
C |  64   0   0   0  17  55   0   0   0  16
G |   0   0   0   0   5  26   0   0   0  11
T |  32   0   0  96  64   5   0   0  96  64

scan!

home
updated Sun Jan 4 21:30:30 2026