1jgg_AB : 3D-footprint complex

structure name	EVEN-SKIPPED HOMEODOMAIN COMPLEXED TO AT-RICH DNA
reference	Aggarwal et al. 'EMBO 14 6280 1995
source	Drosophila melanogaster
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1jgg_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jgg_A interface=1,2,3,45,48,49,52,56, RYRtaftrdqlgrlekefykenyvsrprrcelaaqlnlpestikVwfQNrrMkdkRq > 1jgg_B interface=1,2,3,45,48,49,52,53,56, RYRtaftrdqlgrlekefykenyvsrprrcelaaqlnlpestikVwfQNrrMKdkRq
interface signature	RYRVQNMR/RYRVQNMKR

Estimated binding specificities ?

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# IC=10.245 IC/col=1.024 n_of_columns=10

specificity:

A |  73  96   0   0   7  73  96   0   0  73
C |   7   0   0   0  73   7   0   0   0   7
G |   9   0   0   0   9   9   0   0   0   9
T |   7   0  96  96   7   7   0  96  96   7

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updated Mon Sep 9 12:31:55 2024