1jj4_AB : 3D-footprint complex

structure name	HUMAN PAPILLOMAVIRUS TYPE 18 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET
reference	Hegde et al. J.Biol.Chem. 275 31245 2000
source	Human papillomavirus type 18
experiment	X-ray (resolution=2.40, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jj4_A interface=12,15,16,19,20, mtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtktgiltvtyhsetqrtkflntvaipdsvqilvgymt > 1jj4_B interface=13,16,17,20,21, hmtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtektgiltvtyhsetqrtkflntvaipdsvqilvgymt
interface signature	NKCYR/NKCYR

Estimated binding specificities ?

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# IC=13.452 IC/col=0.841 n_of_columns=16

specificity:

A |   0  72  96   0   0   8  24  24  12  24   4   0   0   0   4   4
C |  88   8   0  96  96   4  24  24   0  24  84   0   0   0   8   4
G |   4   8   0   0   0  80  24  24   8  24   4  96  96   0   4  84
T |   4   8   0   0   0   4  24  24  76  24   4   0   0  96  80   4

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updated Fri Dec 13 09:25:42 2024