1jj4_AB : 3D-footprint complex

structure name	HUMAN PAPILLOMAVIRUS TYPE 18 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET
reference	Hegde et al. J.Biol.Chem. 275 31245 2000
source	Human papillomavirus type 18
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	1jj4_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jj4_A interface=12,15,16,19,20, mtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtktgiltvtyhsetqrtkflntvaipdsvqilvgymt > 1jj4_B interface=13,16,17,20,21, hmtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtektgiltvtyhsetqrtkflntvaipdsvqilvgymt
interface signature	NKCYR/NKCYR

Estimated binding specificities ?

readout + contact

# IC=13.611 IC/col=0.851 n_of_columns=16

specificity:

A |   4  84  96   0   0   4  24  24   8  24   4   0   0   0   4   4
C |  88   4   0  96  96   4  24  24   4  24  80   0   0   0   8   0
G |   0   4   0   0   0  84  24  24  12  24   4  96  92   0   4  88
T |   4   4   0   0   0   4  24  24  72  24   8   0   4  96  80   4

scan!

home
updated Sun Jan 4 21:30:35 2026