1jj4_AB : 3D-footprint complex

structure name	HUMAN PAPILLOMAVIRUS TYPE 18 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET
reference	Hegde et al. J.Biol.Chem. 275 31245 2000
source	Human papillomavirus type 18
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	1jj4_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jj4_A interface=12,15,16,19,20, mtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtktgiltvtyhsetqrtkflntvaipdsvqilvgymt > 1jj4_B interface=13,16,17,20,21, hmtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtektgiltvtyhsetqrtkflntvaipdsvqilvgymt
interface signature	NKCYR/NKCYR

Estimated binding specificities ?

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# IC=13.290 IC/col=0.831 n_of_columns=16

specificity:

A |   6  84  96   0   0   6  24  24  15  24   3   0   0   0   3   3
C |  80   6   0  96  96   3  24  24   2  24  80   0   0   0   7   6
G |   7   3   0   0   0  84  24  24   7  24   6  96  96   0   6  80
T |   3   3   0   0   0   3  24  24  72  24   7   0   0  96  80   7

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updated Mon Sep 9 12:32:02 2024