1jj4_AB : 3D-footprint complex

structure name	HUMAN PAPILLOMAVIRUS TYPE 18 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET
reference	Hegde et al. J.Biol.Chem. 275 31245 2000
source	Human papillomavirus type 18
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	1jj4_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1jj4_A interface=12,15,16,19,20, mtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtktgiltvtyhsetqrtkflntvaipdsvqilvgymt > 1jj4_B interface=13,16,17,20,21, hmtpiihlkgdrNslKClrYRlrkhsdhyrdisstwhwtektgiltvtyhsetqrtkflntvaipdsvqilvgymt
interface signature	NKCYR/NKCYR

Estimated binding specificities ?

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# IC=14.501 IC/col=0.906 n_of_columns=16

specificity:

A |   1  84  96   0   0  13  24  57  11  24   1   0   0   0   1   4
C |  90   1   0  96  96   1  24  11  13  24  93   0   0   0   8   1
G |   4   5   0   0   0  78  24   9  11  24   1  96  96   0   1  90
T |   1   6   0   0   0   4  24  19  61  24   1   0   0  96  86   1

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updated Tue Jul 29 15:00:47 2025