1k61_ABCD : 3D-footprint complex

structure name	MATALPHA2 HOMEODOMAIN BOUND TO DNA
reference	Wolberger et al. 'NUCLEIC 30 5244 2002
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1k61_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1k61_A interface=3,4,47,50,51,54, rgHRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkektit > 1k61_B interface=3,4,47,50,51,54, rgHRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekti > 1k61_C interface=45,49,52, hrftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvsNrrRkekt > 1k61_D interface=1,43,46,47,50,51, RghrftkenvrileswfaknienpyldtkglenlmkntslsrIqiKNwvSNrrrkekt
interface signature	HRNSNR/HRNSNR/NNR/RIKNSN

Estimated binding specificities ?

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# IC=18.935 IC/col=1.052 n_of_columns=18

specificity:

A |   0   0   5   5   0   0  96  10  75  24   0  75  90   0   0  96   0  90
C |   0  90   5   0   0   0   0  10  10  24   0  10   1   0   0   0  96   0
G |  96   0   1   6  96   0   0  70  11  24  96   5   5   0   0   0   0   6
T |   0   6  85  85   0  96   0   6   0  24   0   6   0  96  96   0   0   0

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updated Mon Sep 9 12:33:23 2024