1l3l_BD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA
reference	Molyneaux et al. Nature 417 971 2002
source	Agrobacterium tumefaciens
experiment	X-ray (resolution=1.66, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1l3l_B interface=190,201,202,205,206,209,210, qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktMeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli > 1l3l_D interface=182,193,194,197,198,201, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflawldpkeatylrwiavgktMeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli
interface signature	MYNRVRE/MYNRVR

Estimated binding specificities ?

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# IC=10.274 IC/col=0.734 n_of_columns=14

specificity:

A |   7   0   0   0  73  24  24  24  24   7   0   0  96  60
C |   0   0   0  96   9  24  24  24  24   9   0  96   0  22
G |  75   0  96   0  14  24  24  24  24   7  96   0   0   7
T |  14  96   0   0   0  24  24  24  24  73   0   0   0   7

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updated Fri Dec 13 09:40:47 2024