1l3l_BD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR COMPLEXED WITH PHEROMONE AND DNA
reference	Molyneaux et al. Nature 417 971 2002
source	Agrobacterium tumefaciens
experiment	X-ray (resolution=1.66, R-factor=?)
structural superfamily	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors;C-terminal effector domain of the bipartite response regulators;
reference complex	1l3l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1l3l_B interface=190,201,202,205,206,209,210, qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeatylrwiavgktMeeiadvegvkYNsvRVklREamkrfdvrskahltalairrkli > 1l3l_D interface=182,193,194,197,198,201, mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqstyfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipiktangfmsmftmasdkpvidldreidavaaaatigqiharisflawldpkeatylrwiavgktMeeiadvegvkYNsvRVklReamkrfdvrskahltalairrkli
interface signature	MYNRVRE/MYNRVR

Estimated binding specificities ?

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# IC=10.326 IC/col=0.738 n_of_columns=14

specificity:

A |  14   0   0   0  81  24  24  24  24   7   0   0  96  22
C |   0   0   0  96   8  24  24  24  24   7   0  96   0  51
G |  75   0  96   0   7  24  24  24  24   7  96   0   0  14
T |   7  96   0   0   0  24  24  24  24  75   0   0   0   9

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updated Mon Sep 9 12:46:23 2024