1lq1_AB : 3D-footprint complex

structure name	DNA COMPLEXED STRUCTURE OF THE KEY TRANSCRIPTION FACTOR INITIATING DEVELOPMENT IN SPORULATION BACTERIA
reference	Varughese et al. Structure 10 1041 2002
source	Bacillus subtilis
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	1lq1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1lq1_A interface=45,61,64,65,68,69, kknldasitsiiheigvpahikgylylreaismvyndiellgsiTkvlypdiakkfnttaSrvERaiRHaievawsrgnidsisslfakptnsefiamvadklrleh > 1lq1_B interface=63,67, nldasitsiiheigvpahikgylylreaismvyndiellgsitkvlypdiakkfnttasrveRairHaievawsrgnidsisslfakptnsefiamvadklrl
interface signature	TSERRH/RH

Estimated binding specificities ?

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# IC=8.004 IC/col=0.667 n_of_columns=12

specificity:

A |   9   0   9   0   0  24  24  24  24  11   0   0
C |   9   0  11  96   0  24  24  24  24   9   0   0
G |   9  96   9   0  96  24  24  24  24   9   0  96
T |  69   0  67   0   0  24  24  24  24  67  96   0

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updated Tue Jul 29 15:19:11 2025