1lq1_AB : 3D-footprint complex

structure name	DNA COMPLEXED STRUCTURE OF THE KEY TRANSCRIPTION FACTOR INITIATING DEVELOPMENT IN SPORULATION BACTERIA
reference	Varughese et al. Structure 10 1041 2002
source	Bacillus subtilis
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	1lq1_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1lq1_A interface=45,61,64,65,68,69, kknldasitsiiheigvpahikgylylreaismvyndiellgsiTkvlypdiakkfnttaSrvERaiRHaievawsrgnidsisslfakptnsefiamvadklrleh > 1lq1_B interface=63,67, nldasitsiiheigvpahikgylylreaismvyndiellgsitkvlypdiakkfnttasrveRairHaievawsrgnidsisslfakptnsefiamvadklrl
interface signature	TSERRH/RH

Estimated binding specificities ?

readout + contact

# IC=7.965 IC/col=0.664 n_of_columns=12

specificity:

A |   0  96  67  24  24  24  24   0   0  67   0  67
C |  96   0   9  24  24  24  24  96   0   9  96  11
G |   0   0  11  24  24  24  24   0  96  11   0   9
T |   0   0   9  24  24  24  24   0   0   9   0   9

scan!

home
updated Mon Sep 9 12:49:16 2024