1lws_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE INTEIN HOMING ENDONUCLEASE PI-SCEI BOUND TO ITS RECOGNITION SEQUENCE (ENDONUCLEASE PI-SCEI)
reference	Quiocho et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=3.50, R-factor=?)
structural superfamily	Hedgehog/intein Hint domain;Homing endonucleases;
sequence family	Hom_endassociated Hint; Homing endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1lws_A interface=55,57,90,94,96,101,125,127,165,166,216,219,301,306,309,313,337,339,344,348,350,353,357, cfakgtnvlmadgsiecienievgnkvmgkdgrpreviklprgretmysvvqksQhRahksdssrevpellkftcnathelvvrtprsvRrlsRtIkgvfEvitfemgqkkapdgrivelvkevSkSypisperanelvesyrkasnkayfewtieardlsllgSHvrkatyqtyapilyendhffdymqkskfhltiegpkvlayllglwigdgLsdRatfsvdsrdtslmervteyaeklnlcavaktvnlysenplwdaivglgflkdgvknipsflstdnigtretflaglidsdgYvtdeHgiKatiKtihtsvrdglvslarslglvvsvNaEpakvDmngTkHkiSyaiYmsggdvllnvlskcagskkfrpapaaafarecrgfyfelqelkeddyygitlsddsdhqfllanqvvvhn
interface signature	QRRRIESSSHLRYHKKNEDTHSY

Estimated binding specificities ?

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# IC=17.907 IC/col=0.779 n_of_columns=23

specificity:

A |   0  59  78   0   3  24  24  24  24   0   0   0   6   4   1  67  65   1   0  96  24  24   1
C |   0  24   9   0   5  24  24  24  24  96   0   0   1  86   2  24  25   1  96   0  24  24   1
G |   0   8   1   0   1  24  24  24  24   0   0   0   1   3   1   1   3  92   0   0  24  24   1
T |  96   5   8  96  87  24  24  24  24   0  96  96  88   3  92   4   3   2   0   0  24  24  93

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updated Mon Dec 16 18:05:10 2024