1m5x_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-MSOI BOUND TO ITS DNA SUBSTRATE
reference	Stoddard et al. J.Mol.Biol. 329 253 2003
source	Monomastix sp.
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1m5x_A interface=19,21,23,27,29,30,36,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlipRpDYkdikyQvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 1m5x_B interface=19,21,23,25,27,29,30,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlIpRpDYkdikyqvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYKRDYQSIRRDIDTI/SYKIRDYSIRRDIDTI

Estimated binding specificities ?

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# IC=21.256 IC/col=0.966 n_of_columns=22

specificity:

A |   7   0  81  24  81   0   0   0   0  85  24  24   9   0  96   0   0   0   7   0   1   0
C |   4   0   7  24   7   3   0   0  96   3  24  24  81   0   0  96   0   0  10  96   3   0
G |   7  96   7  24   3   1  96   0   0   3  24  24   3  96   0   0  96   0  17   0   0  96
T |  78   0   1  24   5  92   0  96   0   5  24  24   3   0   0   0   0  96  62   0  92   0

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updated Sun Jan 4 22:05:54 2026