1m5x_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-MSOI BOUND TO ITS DNA SUBSTRATE
reference	Stoddard et al. J.Mol.Biol. 329 253 2003
source	Monomastix sp.
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1m5x_A interface=19,21,23,27,29,30,36,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlipRpDYkdikyQvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 1m5x_B interface=19,21,23,25,27,29,30,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlIpRpDYkdikyqvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYKRDYQSIRRDIDTI/SYKIRDYSIRRDIDTI

Estimated binding specificities ?

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# IC=21.412 IC/col=0.973 n_of_columns=22

specificity:

A |   4   0  82  24  77   1   0   0   0  92  24  24   9   0  96   0   0   0  11   0   0   0
C |   4   0   4  24   9   9   0   0  96   4  24  24  74   0   0  96   0   0  13  96   0   0
G |   4  96  10  24   4   0  96   0   0   0  24  24   9  96   0   0  96   0  13   0   0  96
T |  84   0   0  24   6  86   0  96   0   0  24  24   4   0   0   0   0  96  59   0  96   0

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updated Mon Sep 9 13:00:28 2024