1m5x_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-MSOI BOUND TO ITS DNA SUBSTRATE
reference	Stoddard et al. J.Mol.Biol. 329 253 2003
source	Monomastix sp.
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1m5x_A interface=19,21,23,27,29,30,36,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlipRpDYkdikyQvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 1m5x_B interface=19,21,23,25,27,29,30,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlIpRpDYkdikyqvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYKRDYQSIRRDIDTI/SYKIRDYSIRRDIDTI

Estimated binding specificities ?

readout + contact

# IC=21.323 IC/col=0.969 n_of_columns=22

specificity:

A |   0  91   0  78  96   0   0   0   0   8  24  24   8   0  96   0  91   4  24   0   0  78
C |  96   0   0   8   0  96   0   0  96   4  24  24   4   0   0  96   1   4  24   6  96   8
G |   0   5  96   4   0   0  96   0   0  80  24  24   6  96   0   0   4   8  24   8   0   4
T |   0   0   0   6   0   0   0  96   0   4  24  24  78   0   0   0   0  80  24  82   0   6

scan!

home
updated Fri Dec 13 09:55:55 2024