1m5x_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMING ENDONUCLEASE I-MSOI BOUND TO ITS DNA SUBSTRATE
reference	Stoddard et al. J.Mol.Biol. 329 253 2003
source	Monomastix sp.
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	2fld_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1m5x_A interface=19,21,23,27,29,30,36,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlipRpDYkdikyQvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki > 1m5x_B interface=19,21,23,25,27,29,30,42,44,67,70,72,74,76,78,80, tlqpteaayiagfldgdgSiYaKlIpRpDYkdikyqvslaiSfIqrkdkfpylqdiydqlgkrgnlRkdRgDgIaDyTiIgsthlsiilpdlvpylrikkkqanrilhiinlypqaqknpskfldlvkivddvqnlnkradelkstnydrlleeflkagki
interface signature	SYKRDYQSIRRDIDTI/SYKIRDYSIRRDIDTI

Estimated binding specificities ?

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# IC=21.297 IC/col=0.968 n_of_columns=22

specificity:

A |   0  92   0  69  96   0   0   0   0  10  24  24   7   0  96   0  93   3  24   0   0  79
C |  96   1   0  11   0  96   0   0  96   7  24  24   6   0   0  96   0   6  24   3  96   7
G |   0   3  96  13   0   0  96   0   0  76  24  24   3  96   0   0   3   7  24   9   0   7
T |   0   0   0   3   0   0   0  96   0   3  24  24  80   0   0   0   0  80  24  84   0   3

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updated Wed Jun 24 10:10:07 2026