1n6j_AB : 3D-footprint complex

structure name	STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RECRUITMENT OF HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2
reference	Stroud et al. Nature 422 730 2003
source	HOMO SAPIENS
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	SRF-like;
reference complex	1n6j_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1n6j_A interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrrgig > 1n6j_B interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr
interface signature	RK/RK

Estimated binding specificities ?

readout + contact

# IC=3.945 IC/col=0.438 n_of_columns=9

specificity:

A |   8   8  72  24  24  24  24   8  96
C |  72   0   8  24  24  24  24  11   0
G |   8   0   8  24  24  24  24   8   0
T |   8  88   8  24  24  24  24  69   0

scan!

home
updated Wed Jun 24 10:14:56 2026