1n6j_AB : 3D-footprint complex

structure name	STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RECRUITMENT OF HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2
reference	Stroud et al. Nature 422 730 2003
source	HOMO SAPIENS
experiment	X-ray (resolution=2.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1n6j_A interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrrgig > 1n6j_B interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr
interface signature	RK/RK

Estimated binding specificities ?

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# IC=3.968 IC/col=0.441 n_of_columns=9

specificity:

A |   9   0  67  24  24  24  24   9  96
C |  67   0   9  24  24  24  24  11   0
G |   9   0   9  24  24  24  24   9   0
T |  11  96  11  24  24  24  24  67   0

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updated Fri Dec 13 09:59:59 2024