1owf_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MUTANT IHF (BETAE44A) COMPLEXED WITH THE NATIVE H' SITE (INTEGRATION HOST FACTOR BETA-SUBUNIT)
reference	Gardner et al. J.Mol.Biol. 330 493 2003
source	ESCHERICHIA COLI
experiment	X-ray (resolution=1.95, R-factor=0.232)
structural superfamily	IHF-like DNA-binding proteins;
sequence family	Bacterial DNAbinding protein;
multimeric complexes	1ihf_AB 1ouz_AB 1owf_AB 1owg_AB 2ht0_AB
redundant complexes	2ht0_B 1ihf 1ouz 1owg
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1owf_B interface=46,59,62,63,64,65, mtkselierlatqqshipaktvedavkemlehmastlaqgeriaiRgfgsfslhyrapRtgRNPKtgdkvelegkyvphfkpgkelrdraniyg
interface signature	RRRNPK

Estimated binding specificities ?

contact

# IC=3.968 IC/col=0.220 n_of_columns=18

specificity:

A |   9  67  67  24  24  24  24  24  24  24  24  24  24  24  24  24  96  96
C |  67  11   9  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
G |   9   9  11  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0
T |  11   9   9  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RTRARANAPAKT--   L                         +1owf_B    
                              +--------------1 
  --RGRT--PTKTIG   L   +------2              +1p71_B    
                       !      ! 
  --RCRTNAPTKTIC   L --3      +--------------2iie_A    
                       ! 
  ----HT--------       +---------------------6lmj_A

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updated Tue Dec 19 06:00:38 2023